Package: CoDaStereo 3.1.1

Diogo B. Provete

CoDaStereo: Compositional Data Analysis for Stereological and Histomorphometric Data

Interactive 'shiny' application for compositional data analysis of stereological, histomorphometric and blood-cell count data under the Aitchison geometry. It covers data upload and inspection, zero and missing-value replacement, ternary diagrams, centred log-ratio biplots, user-editable sequential binary partitions with CoDa dendrograms, and permutational multivariate analysis of variance on isometric log-ratio coordinates, optionally including the log-transformed total as described by Pawlowsky-Glahn, Egozcue and Lovell (2015) <doi:10.1177/1471082X14535526>.

Authors:Diogo B. Provete [aut, cre]

CoDaStereo_3.1.1.tar.gz
CoDaStereo_3.1.1.zip(r-4.7-any)CoDaStereo_3.1.1.zip(r-4.6-any)CoDaStereo_3.1.1.zip(r-4.5-any)
CoDaStereo_3.1.1.tgz(r-4.6-any)CoDaStereo_3.1.1.tgz(r-4.5-any)
CoDaStereo_3.1.1.tar.gz(r-4.7-any)CoDaStereo_3.1.1.tar.gz(r-4.6-any)
CoDaStereo_3.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CoDaStereo/json (API)

# Install 'CoDaStereo' in R:

install.packages('CoDaStereo', repos = c('https://diogoprov.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/diogoprov/codastereo/issues

Pkgdown/docs site:https://provetelab.org

On CRAN:

3.00 score 1 exports 161 dependencies

Last updated from:e6713f7085 (on main). Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	214
source / vignettes	OK	523
linux-release	OK	209
macos-release	OK	215
macos-oldrel	OK	169
windows-devel	OK	142
windows-release	OK	148
windows-oldrel	OK	169
wasm-release	OK	141

Exports:run_app

Dependencies:abind ape attempt backports base64enc bayesm bit bit64 boot broom bslib cachem car carData cellranger cli clipr cluster codetools colorspace commonmark compositions config cowplot cpp11 crayon crosstalk DEoptimR Deriv digest doBy dplyr DT ellipse emmeans estimability evaluate FactoMineR farver fastmap flashClust fontawesome fontBitstreamVera fontLiberation fontquiver forcats forecast Formula fracdiff fs gdtools generics ggiraph ggplot2 ggrepel glue golem gridExtra gtable highr hms htmltools htmlwidgets httpuv irlba isoband jquerylib jsonlite knitr labeling later lattice lazyeval leaps lifecycle lme4 lmtest magrittr MASS Matrix MatrixModels memoise mgcv mime minqa modelr multcompView mvtnorm NADA naniar nlme nloptr nnet norm numDeriv otel pbkrtest pillar pkgconfig plyr prettyunits progress promises purrr quantreg R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack readr readxl reformulas rematch rintrojs rlang rmarkdown robustbase RRPP S7 sass scales scatterplot3d shiny shinydashboard showtext showtextdb sourcetools SparseM stringi stringr survival svglite sysfonts systemfonts tensorA textshaping tibble tidyr tidyselect timeDate tinytex truncnorm tzdb UpSetR urca utf8 vctrs viridis viridisLite visdat vroom withr xfun xtable yaml zCompositions zoo

Getting started with CoDa Stereo

Launching the app | Workflow | When to include the total | Deployment

Rendered fromCoDaStereo.Rmdusingknitr::rmarkdown

Last update: 2026-10-21
Started: 2026-10-21

Help page	Topics
Run the CoDa Stereo Application	run_app

Package: CoDaStereo 3.1.1

CoDaStereo: Compositional Data Analysis for Stereological and Histomorphometric Data

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)