Package: crywolf
Title: Bayesian False-Positive Occupancy Models with Calibration Checks
Version: 1.2.0
Authors@R: c(
    person("Diogo B.", "Provete", email = "dbprovete@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0097-0651")),
    person("Tessa", "Rhinehart", role = "aut",
           comment = c(ORCID = "0000-0002-4352-3464")),
    person("Liliana", "Piatti", role = "aut",
           comment = c(ORCID = "0000-0001-6324-1723")),
    person("Larissa Sayuri Moreira", "Sugai", role = "aut",
           comment = c(ORCID = "0000-0002-6248-291X"))
    )
Description: Fits single-season occupancy models that correct for false
        positives from automated detectors, such as acoustic
        classifiers, using the multiple-methods (site-confirmation)
        design of Miller et al. (2011) <doi:10.1890/10-1396.1>, in
        which a subset of detections is verified. Models are written in
        'Stan' and fitted through 'cmdstanr'. The false-positive rate
        can be constant or depend on site covariates, and the
        true-detection process accepts observation covariates and a
        recorder random effect. The package also simulates data under
        homogeneous, unstructured, and structured false-positive
        regimes and runs simulation-based calibration checks, so users
        can ask whether the correction keeps nominal interval coverage
        for their own design and how much verification it needs.
License: GPL (>= 3)
URL: https://github.com/diogoprov/crywolf,
        https://provetelab.org/crywolf/
BugReports: https://github.com/diogoprov/crywolf/issues
Depends: R (>= 4.2)
Imports: cmdstanr (>= 0.8.0), loo, posterior, purrr (>= 1.0.0), stats,
        tibble, tools, utils
Suggests: bayesplot, furrr, future, ggplot2, knitr, progressr,
        rmarkdown, testthat (>= 3.0.0), unmarked
VignetteBuilder: knitr
Remotes: stan-dev/cmdstanr
Additional_repositories: https://stan-dev.r-universe.dev
SystemRequirements: CmdStan
        (https://mc-stan.org/users/interfaces/cmdstan)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.1
LazyData: true
Repository: https://diogoprov.r-universe.dev
Date/Publication: 2026-10-16 02:21:58 UTC
RemoteUrl: https://github.com/diogoprov/crywolf
RemoteRef: HEAD
RemoteSha: 62633f489c6cf1cf533c71eee4f5408250ea7389
NeedsCompilation: no
Packaged: 2026-10-16 07:36:20 UTC; root
Author: Diogo B. Provete [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0097-0651>),
  Tessa Rhinehart [aut] (ORCID: <https://orcid.org/0000-0002-4352-3464>),
  Liliana Piatti [aut] (ORCID: <https://orcid.org/0000-0001-6324-1723>),
  Larissa Sayuri Moreira Sugai [aut] (ORCID:
    <https://orcid.org/0000-0002-6248-291X>)
Maintainer: Diogo B. Provete <dbprovete@gmail.com>