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# CITATION.cff file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "comdynamite" in publications use:'
type: software
license: MIT
title: 'comdynamite: Linking Traits, Phylogenies and Biogeography in Metacommunities'
version: 0.6.0.9000
doi: 10.5281/zenodo.23993533
identifiers:
- type: doi
  value: 10.32614/CRAN.package.comdynamite
abstract: Methods that link traits, phylogenies, biogeography and metacommunities,
  to analyse data and to simulate it. Analyses include the node regression of Leibold
  et al. (2010) <https://doi.org/10.1111/j.1461-0248.2010.01523.x>, with biogeographic
  events and restricted null models, the phylogenetic gradient analysis of Peres-Neto
  et al. (2012) <https://doi.org/10.1890/11-0494.1>, and the phylogenetic community
  composition and beta diversity tests of Peres-Neto and Kembel (2015) <https://doi.org/10.1007/s11258-014-0405-0>.
  Simulations follow the process-based model of Thompson et al. (2020) <https://doi.org/10.1111/ele.13568>,
  with environmental filtering, competition, demographic stochasticity and dispersal
  in spatially implicit or grid landscapes. Species traits can carry phylogenetic
  signal or evolve under an Ornstein-Uhlenbeck process, and competition can be structured
  by relatedness. Rule-based assembly follows Kraft et al. (2007) <https://doi.org/10.1086/519400>.
  Models were implemented from the published equations.
authors:
- family-names: Provete
  given-names: Diogo B.
  email: dbprovete@gmail.com
preferred-citation:
  type: manual
  title: 'comdynamite: Linking Traits, Phylogenies and Biogeography in Metacommunities'
  authors:
  - family-names: Provete
    given-names: Diogo B.
    email: dbprovete@gmail.com
  year: '2026'
  notes: R package version 0.6.0.9000
  url: https://github.com/diogoprov/comdynamite
  doi: 10.5281/zenodo.23993533
repository: https://diogoprov.r-universe.dev
repository-code: https://github.com/diogoprov/comdynamite
commit: 69ab0b1aa6ea54a27037d4b7ef9c8bdb83a09268
url: https://provetelab.org/comdynamite/
date-released: '2026-11-07'
contact:
- family-names: Provete
  given-names: Diogo B.
  email: dbprovete@gmail.com
keywords:
- metacommunity
- community-ecology
- simulation
- species-sorting
- mass-effects
- dispersal
- competition
- phylogenetics
- community-phylogenetics
- process-based-model